STRINGSTRING
PP1S3_222V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S3_222V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S3_222V6.1Predicted protein (76 aa)    
Predicted Functional Partners:
PP1S168_35V6.1
Predicted protein (89 aa)
     
  0.996
PP1S9_158V6.1
Annotation not available (90 aa)
     
 
  0.936
PP1S178_121V6.1
Predicted protein (90 aa)
     
 
  0.936
PP1S28_170V6.1
Predicted protein (85 aa)
     
 
  0.900
PP1S46_244V6.1
Predicted protein; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (87 aa)
     
        0.879
PP1S219_41V6.1
Predicted protein (87 aa)
     
        0.879
PP1S80_95V6.1
Annotation not available (133 aa)
     
  0.872
PP1S389_51V6.1
Predicted protein (197 aa)
     
  0.869
PP1S389_49V6.1
Predicted protein (197 aa)
     
  0.869
PP1S46_248V6.1
Predicted protein (160 aa)
     
  0.799
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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