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STRINGSTRING
PP1S3_508V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S3_508V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S3_508V6.1Predicted protein (386 aa)    
Predicted Functional Partners:
PP1S37_38V6.1
Pectate lyase (364 aa)
 
   
  0.775
PP1S409_2V6.1
Pectate lyase (516 aa)
 
   
  0.769
PP1S28_242V6.1
Pectate lyase (514 aa)
 
   
  0.769
PP1S139_45V6.1
Pectate lyase (543 aa)
 
   
  0.766
PP1S61_217V6.1
Pectate lyase (569 aa)
 
   
  0.765
PP1S385_14V6.1
Pectate lyase (482 aa)
 
   
  0.760
PP1S563_1V6.2
Pectate lyase (421 aa)
 
   
  0.756
PP1S92_84V6.1
Pectate lyase (564 aa)
   
   
    0.753
PP1S45_65V6.1
Pectate lyase (469 aa)
 
   
  0.751
PP1S173_162V6.1
Pectate lyase (425 aa)
 
   
  0.751
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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