STRINGSTRING
PP1S401_17V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S401_17V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S401_17V6.1Predicted protein (645 aa)    
Predicted Functional Partners:
PP1S305_36V6.1
Predicted protein (626 aa)
     
  0.997
PP1S238_32V6.1
Predicted protein (391 aa)
     
  0.997
PP1S12_340V6.1
Predicted protein (546 aa)
     
  0.997
PP1S238_33V6.1
Predicted protein (507 aa)
     
  0.996
PP1S406_7V6.1
Predicted protein (500 aa)
     
  0.957
PP1S36_220V6.1
Predicted protein (494 aa)
     
  0.957
PP1S16_315V6.1
Annotation not available (487 aa)
     
  0.957
VPE-gamma
Predicted protein (495 aa)
     
  0.957
PP1S234_38V6.1
Predicted protein (1163 aa)
     
  0.947
PP1S114_64V6.1
Annotation not available (231 aa)
         
  0.938
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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