STRINGSTRING
PP1S406_11V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S406_11V6.1" - Annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S406_11V6.1Annotation not available (601 aa)    
Predicted Functional Partners:
PP1S2_319V6.1
Predicted protein (579 aa)
           
  0.475
PP1S1_100V6.1
Predicted protein (534 aa)
           
  0.475
PP1S139_72V6.2
Predicted protein (571 aa)
           
  0.475
PP1S75_75V6.1
Nitrate transporter (549 aa)
           
  0.474
PP1S449_20V6.1
Predicted protein (548 aa)
           
  0.474
PP1S254_65V6.1
Nitrate transporter (517 aa)
           
  0.474
PP1S12_58V6.1
Predicted protein (517 aa)
           
  0.474
PP1S12_378V6.1
Nitrate transporter (517 aa)
           
  0.474
PP1S106_166V6.1
Nitrate transporter (519 aa)
           
  0.474
NRT2;2
Nitrate transporter (547 aa)
           
  0.474
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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