STRINGSTRING
PP1S406_3V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S406_3V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S406_3V6.1Predicted protein (782 aa)    
Predicted Functional Partners:
PP1S93_33V6.1
Predicted protein (962 aa)
       
  0.748
PP1S81_95V6.1
Predicted protein (960 aa)
       
  0.748
PP1S27_304V6.1
Annotation not available (505 aa)
       
  0.719
PP1S44_240V6.1
Annotation not available (1095 aa)
   
 
  0.707
PP1S6484_1V6.1
Predicted protein (330 aa)
 
       
0.673
PP1S3133_1V6.1
Predicted protein (342 aa)
   
 
  0.644
PP1S96_56V6.2
Predicted protein (363 aa)
         
  0.533
PP1S35_261V6.1
Predicted protein (368 aa)
         
  0.533
PP1S304_43V6.1
Predicted protein (538 aa)
       
  0.526
PP1S399_34V6.1
Predicted protein (421 aa)
     
      0.523
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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