STRINGSTRING
PP1S407_1V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S407_1V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S407_1V6.1Predicted protein (447 aa)    
Predicted Functional Partners:
PP1S303_24V6.1
Predicted protein (446 aa)
         
  0.672
PP1S65_267V6.1
Malate dehydrogenase (459 aa)
     
      0.653
PP1S48_151V6.1
Malate dehydrogenase (459 aa)
     
      0.653
PP1S243_89V6.1
Malate dehydrogenase (466 aa)
     
      0.653
PP1S235_81V6.1
Malate dehydrogenase (333 aa)
     
      0.653
PP1S163_121V6.1
Annotation not available (197 aa)
     
      0.653
PP1S214_85V6.1
Predicted protein (1090 aa)
         
  0.610
PP1S86_63V6.1
Predicted protein (393 aa)
     
 
    0.587
PP1S61_265V6.4
Predicted protein (445 aa)
     
 
    0.587
PP1S414_23V6.1
Predicted protein (389 aa)
     
 
    0.587
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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