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STRINGSTRING
PP1S40_208V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S40_208V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S40_208V6.1Predicted protein (625 aa)    
Predicted Functional Partners:
PP1S382_38V6.1
Predicted protein (443 aa)
       
      0.823
PP1S570_1V6.1
annotation not available (1074 aa)
           
  0.522
PP1S358_10V6.1
Predicted protein (1075 aa)
           
  0.522
PP1S30_364V6.1
annotation not available (525 aa)
           
  0.522
PP1S814_3V6.1
Carboxypeptidase; Belongs to the peptidase S10 family (415 aa)
           
  0.520
PP1S59_125V6.1
Uncharacterized protein; Belongs to the peptidase S10 family (512 aa)
           
  0.520
PP1S149_206V6.1
Carboxypeptidase; Belongs to the peptidase S10 family (516 aa)
           
  0.520
PP1S244_32V6.2
Predicted protein (427 aa)
       
 
  0.506
PP1S175_59V6.1
Predicted protein (430 aa)
       
 
  0.506
PP1S85_39V6.1
annotation not available (595 aa)
           
  0.501
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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