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STRINGSTRING
PP1S410_38V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S410_38V6.1" - Histone H3 in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S410_38V6.1Histone H3 (136 aa)    
Predicted Functional Partners:
HTA1501
Histone H2A (145 aa)
     
 
  0.969
HTA1506
Histone H2A (144 aa)
     
 
  0.969
HTA1502
Histone H2A (145 aa)
     
 
  0.969
PP1S275_13V6.1
annotation not available (133 aa)
       
 
0.964
PP1S3_594V6.1
Histone H3 (136 aa)
       
 
0.964
PP1S3_368V6.1
Histone H3 (136 aa)
       
 
0.964
HTR1510
Histone H3 (136 aa)
       
 
0.964
HTA1503
Histone H2A (148 aa)
 
 
 
  0.944
HTA1511
Histone H2A (140 aa)
 
 
 
  0.944
PP1S47_181V6.1
Histone H2A (132 aa)
 
 
 
  0.944
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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