• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S417_2V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S417_2V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S417_2V6.1Predicted protein (518 aa)    
Predicted Functional Partners:
PP1S62_130V6.2
annotation not available (432 aa)
       
 
  0.973
PP1S31_246V6.1
Predicted protein (352 aa)
       
 
  0.852
PP1S136_12V6.1
Predicted protein (379 aa)
       
 
  0.852
CHR1532
annotation not available (2140 aa)
           
  0.792
PP1S95_19V6.1
Predicted protein (304 aa)
           
  0.721
PP1S415_8V6.1
annotation not available (294 aa)
           
  0.721
PP1S138_114V6.1
annotation not available (70 aa)
           
  0.718
PP1S336_69V6.2
Predicted protein (469 aa)
           
  0.713
PP1S20_21V6.2
Predicted protein (491 aa)
           
  0.713
TOP6B
DNA topoisomerase 6 subunit B; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP; Belongs to the TOP6B family (692 aa)
           
  0.700
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (12%) [HD]