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CHR1526 protein (Physcomitrella patens) - STRING interaction network
"CHR1526" - SNF2 superfamily RAD5 protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHR1526SNF2 superfamily RAD5 protein (1194 aa)    
Predicted Functional Partners:
PP1S46_194V6.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
       
 
  0.953
PP1S227_112V6.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (224 aa)
       
 
  0.953
PP1S21_400V6.1
Annotation not available (1225 aa)
     
 
  0.942
PP1S69_54V6.1
Predicted protein (703 aa)
     
 
  0.940
PP1S114_188V6.1
Predicted protein (754 aa)
     
 
  0.940
PP1S3133_1V6.1
Predicted protein (342 aa)
     
 
  0.908
PP1S9_477V6.1
Annotation not available (1376 aa)
     
 
  0.849
PP1S18_235V6.1
Predicted protein (716 aa)
     
 
  0.847
PP1S275_20V6.1
Predicted protein (1058 aa)
     
 
  0.821
PP1S60_129V6.1
Predicted protein (143 aa)
     
 
  0.816
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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