STRINGSTRING
PP1S425_21V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S425_21V6.1" - Annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S425_21V6.1Annotation not available (243 aa)    
Predicted Functional Partners:
PP1S9_103V6.1
Annotation not available (426 aa)
       
      0.633
PP1S68_119V6.1
Predicted protein (333 aa)
     
  0.630
PP1S97_119V6.2
Plant-unique Rab5 homolog (226 aa)
       
 
  0.595
PP1S543_3V6.2
Predicted protein (226 aa)
       
 
  0.595
RabF1
Plant-unique Rab5 homologRab5/RabF-family small GTPase (227 aa)
       
 
  0.595
RabF2A2
Rab5/RabF-family small GTPase (201 aa)
       
 
  0.595
RabF2A1
Rab5/RabF-family small GTPase (201 aa)
       
 
  0.595
PP1S49_32V6.1
Predicted protein (471 aa)
     
 
  0.587
PP1S292_39V6.1
Predicted protein (457 aa)
     
 
  0.587
PP1S285_10V6.1
Predicted protein (463 aa)
     
 
  0.587
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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