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STRINGSTRING
PP1S42_171V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S42_171V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S42_171V6.1Predicted protein; Belongs to the AAA ATPase family (1118 aa)    
Predicted Functional Partners:
PP1S509_22V6.2
Predicted protein (1030 aa)
     
   
  0.933
PP1S26_23V6.1
Predicted protein (1029 aa)
     
   
  0.933
PP1S376_31V6.1
Predicted protein (558 aa)
     
   
  0.885
PP1S141_33V6.1
annotation not available (290 aa)
     
   
  0.885
PP1S3_467V6.1
Predicted protein (757 aa)
     
        0.874
PP1S182_1V6.1
Predicted protein (525 aa)
     
        0.863
PP1S270_86V6.1
annotation not available (1367 aa)
     
   
  0.783
PP1S256_50V6.1
Predicted protein (708 aa)
     
   
  0.721
PP1S22_50V6.1
Predicted protein (2742 aa)
     
   
  0.696
PP1S355_65V6.1
Predicted protein (455 aa)
     
   
  0.683
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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