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STRINGSTRING
PP1S438_26V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S438_26V6.1" - Transmembrane 9 superfamily member in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S438_26V6.1Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family (590 aa)    
Predicted Functional Partners:
PP1S135_111V6.1
Predicted protein (720 aa)
     
 
  0.769
PP1S130_295V6.1
Predicted protein (847 aa)
     
   
  0.691
PP1S36_98V6.1
Predicted protein (851 aa)
     
   
  0.681
PP1S145_28V6.1
Predicted protein (847 aa)
     
   
  0.681
PP1S79_27V6.1
Predicted protein (795 aa)
     
   
  0.653
PP1S58_1V6.1
Predicted protein (794 aa)
     
   
  0.653
PP1S30_178V6.1
annotation not available (597 aa)
     
 
  0.643
PP1S120_27V6.2
Predicted protein (602 aa)
     
 
  0.643
PP1S65_248V6.2
Predicted protein (752 aa)
     
   
  0.632
PP1S85_96V6.1
annotation not available (1119 aa)
           
  0.618
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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