STRINGSTRING
PP1S43_13V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S43_13V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S43_13V6.1Predicted protein (169 aa)    
Predicted Functional Partners:
rpl16
Ribosomal protein L16 (561 aa)
     
  0.999
PP1S136_220V6.1
Predicted protein (260 aa)
     
  0.999
PP1S431_4V6.1
Predicted protein (232 aa)
     
  0.999
PP1S138_84V6.2
Predicted protein (240 aa)
     
  0.999
PP1S9_29V6.1
Annotation not available (674 aa)
     
 
  0.999
PP1S49_47V6.1
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (674 aa)
     
 
  0.999
PP1S139_50V6.1
Predicted protein (355 aa)
     
 
  0.999
PP1S35_207V6.1
Predicted protein (267 aa)
     
 
  0.999
PP1S198_53V6.1
Predicted protein (269 aa)
     
 
  0.999
PP1S58_38V6.1
60S ribosomal protein L13 (207 aa)
     
  0.998
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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