STRINGSTRING
PP1S46_164V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S46_164V6.1" - Predicted protein in Physcomitrella patens
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S46_164V6.1Predicted protein (331 aa)    
Predicted Functional Partners:
PP1S191_81V6.1
Predicted protein (245 aa)
 
 
  0.987
PP1S274_69V6.1
Urease (837 aa)
 
 
  0.986
PP1S101_185V6.1
Predicted protein (307 aa)
 
 
  0.944
PP1S4149_4V6.1
Predicted protein (304 aa)
         
  0.523
PP1S196_105V6.1
Annotation not available (1014 aa)
           
  0.477
PP1S137_132V6.1
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (1008 aa)
           
  0.477
PP1S272_35V6.1
Predicted protein (231 aa)
              0.449
PP1S29_169V6.1
DNA-directed RNA polymerase (665 aa)
           
  0.433
PP1S19_29V6.1
Predicted protein (296 aa)
         
  0.426
PP1S74_252V6.1
Annotation not available (307 aa)
           
  0.412
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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