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ppabcf1 protein (Physcomitrella patens) - STRING interaction network
"ppabcf1" - ATP-binding cassette transporter, subfamily F, member 1 protein PpABCF1 in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppabcf1ATP-binding cassette transporter, subfamily F, member 1 protein PpABCF1 (726 aa)    
Predicted Functional Partners:
PP1S71_218V6.1
Annotation not available (308 aa)
     
 
  0.932
EF1Bgamma2
Predicted protein (428 aa)
     
 
  0.932
EF1Bgamma4
Predicted protein (428 aa)
     
 
  0.932
EF1Bgamma1
Predicted protein (432 aa)
     
 
  0.932
PP1S395_30V6.1
50S ribosomal protein L33 (57 aa)
     
 
  0.892
PP1S12_74V6.1
Predicted protein (1719 aa)
     
 
  0.799
PP1S71_289V6.1
Predicted protein (898 aa)
     
      0.751
PP1S20_312V6.1
Annotation not available (904 aa)
     
      0.751
PP1S185_102V6.1
Predicted protein (608 aa)
     
      0.751
PP1S138_31V6.1
Predicted protein; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (534 aa)
     
      0.705
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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