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ppabcf1 protein (Physcomitrella patens) - STRING interaction network
"ppabcf1" - ATP-binding cassette transporter, subfamily F, member 1 protein PpABCF1 in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppabcf1ATP-binding cassette transporter, subfamily F, member 1 protein PpABCF1 (726 aa)    
Predicted Functional Partners:
PP1S169_131V6.1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1200 aa)
     
 
  0.944
PP1S12_74V6.1
annotation not available (1719 aa)
     
 
  0.942
PP1S71_289V6.1
annotation not available (898 aa)
     
      0.935
PP1S61_52V6.1
Predicted protein (625 aa)
     
      0.935
PP1S2_560V6.1
Predicted protein (620 aa)
     
      0.935
PP1S2_383V6.1
Predicted protein (715 aa)
     
      0.935
PP1S239_71V6.1
Predicted protein (710 aa)
     
      0.935
PP1S20_312V6.1
annotation not available (904 aa)
     
      0.935
PP1S185_102V6.1
Predicted protein (608 aa)
     
      0.935
PP1S641_1V6.1
Predicted protein (807 aa)
     
      0.922
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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