STRINGSTRING
PP1S48_69V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S48_69V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S48_69V6.1Predicted protein (512 aa)    
Predicted Functional Partners:
SWRCA1502
DNA methyltransferase 1-associated protein (485 aa)
     
  0.973
PP1S28_230V6.1
Annotation not available (488 aa)
     
  0.973
RUVBL1501
DNA helicase, TBP-interacting protein (456 aa)
     
  0.971
PP1S40_80V6.1
Annotation not available (146 aa)
     
  0.971
PP1S40_79V6.1
Annotation not available (126 aa)
     
  0.971
CHR1515
SWR1 complex protein, SNF2 family DNA-dependent ATPase (3163 aa)
       
  0.970
CHR1545
SWR1 complex protein, SNF2 family DNA-dependent ATPase (3255 aa)
       
  0.970
HTA1501
Histone H2A (145 aa)
     
  0.968
HTA1506
Histone H2A (144 aa)
     
  0.968
HTA1502
Histone H2A (145 aa)
     
  0.968
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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