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RDR1502 protein (Physcomitrella patens) - STRING interaction network
"RDR1502" - RNA-dependent RNA polymerase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RDR1502RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1152 aa)    
Predicted Functional Partners:
SGS1501
Suppressor of silencing (725 aa)
     
 
  0.985
PP1S149_37V6.1
annotation not available (1403 aa)
     
 
  0.968
DCL1504
annotation not available (1602 aa)
     
 
  0.883
PP1S82_159V6.1
annotation not available (319 aa)
     
 
  0.883
PpDCL1b
annotation not available (778 aa)
     
 
  0.852
PpDCL1a
DsRNA-specific nuclease dicer and related ribonuclease ; Belongs to the helicase family. Dicer subfamily (1866 aa)
     
 
  0.852
PP1S196_67V6.1
Predicted protein (473 aa)
     
 
  0.852
HEN1501
HEN1 protein (1021 aa)
           
  0.844
RHEL1501
RNA helicase (1214 aa)
     
 
  0.825
PP1S39_63V6.1
RNA helicase (630 aa)
           
  0.796
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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