• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S509_10V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S509_10V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S509_10V6.1annotation not available (829 aa)    
Predicted Functional Partners:
PP1S326_65V6.1
Predicted protein (647 aa)
           
  0.676
PP1S106_69V6.1
Predicted protein (597 aa)
           
  0.676
PP1S65_233V6.1
annotation not available (249 aa)
           
  0.566
PP1S31_246V6.1
Predicted protein (352 aa)
           
  0.561
PP1S136_12V6.1
Predicted protein (379 aa)
           
  0.561
PP1S122_165V6.1
Predicted protein (1022 aa)
           
  0.545
PP1S9294_1V6.1
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (293 aa)
           
  0.519
PP1S517_8V6.1
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner (761 aa)
           
  0.519
PP1S275_106V6.1
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner (785 aa)
           
  0.519
PP1S35_152V6.1
annotation not available (1073 aa)
           
  0.510
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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