STRINGSTRING
PP1S523_9V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S523_9V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S523_9V6.1Predicted protein (588 aa)    
Predicted Functional Partners:
PP1S220_98V6.1
Annotation not available (599 aa)
       
  0.955
HDA1504
Histone deacetylase (723 aa)
   
  0.914
HDA1505
Predicted protein (774 aa)
   
  0.914
HDA1506
Histone deacetylase (431 aa)
   
  0.914
HTR1516
Histone H3 (128 aa)
     
  0.909
HTR1501
Histone H3 (199 aa)
       
  0.908
PP1S96_114V6.1
Histone H3 (136 aa)
       
  0.908
PP1S540_5V6.1
Histone H3 (136 aa)
       
  0.908
PP1S410_38V6.1
Histone H3 (136 aa)
       
  0.908
HTR1510
Histone H3 (136 aa)
       
  0.908
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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