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HDA1503 protein (Physcomitrella patens) - STRING interaction network
"HDA1503" - Class III RPD3 type histone deacetylase protein in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDA1503Class III RPD3 type histone deacetylase protein (352 aa)    
Predicted Functional Partners:
SDG1509
Trithorax-like protein, histone-lysine N-methyltransferase (1832 aa)
   
  0.951
SDG1511
Trithorax-like protein, histone-lysine N-methyltransferase (1103 aa)
   
  0.951
PP1S47_35V6.1
Annotation not available (1301 aa)
   
  0.951
SDG1512
Predicted protein (1814 aa)
   
  0.951
PP1S223_92V6.1
Annotation not available (1289 aa)
   
  0.951
PP1S206_25V6.1
Annotation not available (458 aa)
     
  0.949
NFC1501
Nucleosome remodeling factor, p48 subunit (422 aa)
     
  0.949
PP1S480_18V6.1
Annotation not available (207 aa)
     
  0.890
SNT1502
Putative histone deacetylase complex, SIN3 component (1510 aa)
     
  0.890
SNT1501
Putative histone deacetylase complex, SIN3 component (1387 aa)
     
  0.890
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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