STRINGSTRING
PP1S54_186V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S54_186V6.2" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S54_186V6.2Predicted protein (307 aa)    
Predicted Functional Partners:
PP1S370_8V6.1
Predicted protein (303 aa)
         
0.654
PP1S183_11V6.2
Alternative oxidase (365 aa)
           
  0.480
PP1S101_241V6.1
Predicted protein (565 aa)
           
  0.471
PP1S28_322V6.1
Uncharacterized protein (547 aa)
     
   
  0.423
PP1S28_321V6.1
Annotation not available (547 aa)
     
   
  0.423
PP1S170_67V6.1
Predicted protein (766 aa)
     
   
  0.423
PP1S16_28V6.1
Annotation not available (270 aa)
           
  0.414
PP1S28_387V6.1
Predicted protein (519 aa)
           
  0.414
PP1S120_70V6.1
Predicted protein (534 aa)
           
  0.414
PP1S82_154V6.1
Predicted protein (656 aa)
           
  0.407
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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