STRINGSTRING
PP1S54_54V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S54_54V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S54_54V6.1Predicted protein (796 aa)    
Predicted Functional Partners:
PP1S60_307V6.1
Predicted protein (347 aa)
     
  0.943
PP1S245_32V6.2
Predicted protein (322 aa)
     
  0.935
PP1S1_402V6.1
Annotation not available (744 aa)
     
  0.935
PP1S130_285V6.1
Predicted protein (241 aa)
       
 
  0.890
PP1S34_215V6.2
Predicted protein (467 aa)
     
 
  0.881
PP1S68_188V6.1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (236 aa)
       
  0.852
PP1S226_55V6.1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (243 aa)
       
  0.852
PP1S213_66V6.1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (248 aa)
       
  0.852
PP1S6_193V6.1
Predicted protein (210 aa)
     
    0.837
SYP3A1
Qa-SNARE, SYP3/Sed5p/Syntaxin 5-type (357 aa)
     
  0.803
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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