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CHR1515 protein (Physcomitrella patens) - STRING interaction network
"CHR1515" - SWR1 complex protein, SNF2 family DNA-dependent ATPase in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHR1515SWR1 complex protein, SNF2 family DNA-dependent ATPase (3163 aa)    
Predicted Functional Partners:
PP1S48_69V6.1
Predicted protein (512 aa)
       
  0.970
SWRCA1502
DNA methyltransferase 1-associated protein (485 aa)
     
  0.962
PP1S28_230V6.1
Annotation not available (488 aa)
     
  0.962
ARP1504
Actin-related protein Arp5 (731 aa)
     
  0.952
PP1S505_21V6.1
Predicted protein (160 aa)
       
  0.950
RUVBL1501
DNA helicase, TBP-interacting protein (456 aa)
     
  0.945
PP1S40_80V6.1
Annotation not available (146 aa)
     
  0.945
PP1S40_79V6.1
Annotation not available (126 aa)
     
  0.945
PP1S13_42V6.1
Predicted protein (176 aa)
       
 
  0.944
YDG1502
Predicted protein (323 aa)
     
  0.938
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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