STRINGSTRING
PP1S56_227V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S56_227V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S56_227V6.1Predicted protein (296 aa)    
Predicted Functional Partners:
PP1S58_120V6.1
Predicted protein (122 aa)
     
 
  0.963
PP1S104_30V6.1
Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (186 aa)
     
        0.883
PP1S139_5V6.1
Predicted protein (351 aa)
     
        0.858
PP1S47_85V6.1
Predicted protein (595 aa)
     
        0.855
PP1S59_294V6.1
Annotation not available (234 aa)
     
      0.821
PP1S51_33V6.1
Predicted protein (325 aa)
     
      0.821
PP1S126_109V6.1
Predicted protein (467 aa)
     
      0.821
PP1S198_54V6.1
Predicted protein (358 aa)
     
        0.808
PP1S188_71V6.1
Predicted protein (115 aa)
     
        0.808
PP1S22_59V6.1
Predicted protein (515 aa)
     
        0.793
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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