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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S58_171V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S58_171V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S58_171V6.1annotation not available (818 aa)    
Predicted Functional Partners:
PP1S105_58V6.1
Predicted protein (433 aa)
           
  0.776
PP1S9_108V6.2
annotation not available (276 aa)
           
  0.775
PP1S14_257V6.1
Predicted protein (321 aa)
           
  0.775
PP1S249_30V6.1
Predicted protein (293 aa)
           
  0.770
PP1S216_69V6.1
Predicted protein (344 aa)
           
  0.769
PP1S288_27V6.1
Predicted protein (570 aa)
           
  0.633
PP1S158_75V6.1
annotation not available (751 aa)
           
  0.633
PP1S13_100V6.1
annotation not available (305 aa)
           
  0.633
CHR1522
annotation not available (2173 aa)
           
  0.522
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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