STRINGSTRING
PP1S58_199V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S58_199V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S58_199V6.1Predicted protein (723 aa)    
Predicted Functional Partners:
PP1S251_77V6.1
Predicted protein; Component of the post-replicative DNA mismatch repair system (MMR) (951 aa)
 
  0.995
PP1S152_6V6.1
Annotation not available (1416 aa)
 
  0.994
PP1S90_86V6.1
Predicted protein (1076 aa)
 
  0.994
PP1S226_85V6.1
Annotation not available (789 aa)
 
  0.993
PP1S202_64V6.1
Annotation not available (174 aa)
 
  0.992
HAG1501
Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 (677 aa)
 
  0.992
PP1S3_417V6.1
Predicted protein (1860 aa)
 
  0.992
PP1S30_339V6.1
Uncharacterized protein (1309 aa)
 
  0.991
PP1S16_395V6.1
Annotation not available (276 aa)
   
  0.990
PP1S222_41V6.1
Predicted protein (1022 aa)
   
  0.989
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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