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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S59_346V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S59_346V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S59_346V6.1annotation not available (517 aa)    
Predicted Functional Partners:
PP1S149_143V6.1
Predicted protein (311 aa)
           
  0.645
PP1S49_13V6.1
Predicted protein (763 aa)
           
  0.627
PP1S44_327V6.1
annotation not available (235 aa)
           
  0.627
PP1S184_136V6.1
annotation not available (790 aa)
           
  0.627
CHR1530
SNF2 family DNA-dependent ATPase (817 aa)
           
  0.614
SDG1530
Histone-lysine N-methyltransferase (614 aa)
       
 
  0.599
PP1S13_29V6.1
annotation not available (657 aa)
           
  0.597
PP1S1_376V6.1
Uncharacterized protein (363 aa)
           
  0.566
HDA1503
Class III RPD3 type histone deacetylase protein (352 aa)
           
  0.561
PP1S34_438V6.1
annotation not available (407 aa)
           
  0.561
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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