STRINGSTRING
PP1S5_404V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S5_404V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S5_404V6.1Predicted protein (257 aa)    
Predicted Functional Partners:
PP1S197_89V6.1
Predicted protein (288 aa)
   
   
  0.687
PP1S54_101V6.1
Predicted protein (285 aa)
   
   
  0.684
PP1S58_244V6.1
Predicted protein (303 aa)
   
   
  0.516
PP1S54_55V6.1
Predicted protein (290 aa)
   
   
  0.510
PP1S201_15V6.1
Predicted protein (229 aa)
   
        0.507
PP1S25_8V6.1
Predicted protein (229 aa)
   
        0.506
PP1S37_298V6.1
Predicted protein (286 aa)
   
        0.505
PP1S30_179V6.1
Predicted protein (292 aa)
   
          0.502
PP1S145_80V6.2
Predicted protein (250 aa)
   
          0.501
PP1S59_217V6.1
Predicted protein (374 aa)
   
        0.498
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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