STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S61_265V6.4Predicted protein; Belongs to the serpin family (445 aa)    
Predicted Functional Partners:
PP1S19_362V6.2
Predicted protein; Belongs to the peptidase C1 family
    
 
 0.920
PP1S285_10V6.1
Predicted protein; Belongs to the peptidase C1 family
    
 
 0.920
PP1S292_39V6.2
Predicted protein; Belongs to the peptidase C1 family
    
 
 0.920
PP1S369_30V6.2
Predicted protein; Belongs to the peptidase C1 family
    
 
 0.920
PP1S49_32V6.1
Predicted protein; Belongs to the peptidase C1 family
    
 
 0.920
PP1S121_170V6.1
annotation not available
   
    0.885
PP1S87_39V6.1
Predicted protein
   
    0.885
PP1S159_80V6.1
Predicted protein
   
    0.880
PP1S106_134V6.1
Predicted protein
   
    0.878
PP1S35_271V6.1
Elongator complex protein 1; Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation
   
    0.867
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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