• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S66_196V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S66_196V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S66_196V6.1Predicted protein (381 aa)    
Predicted Functional Partners:
PP1S85_32V6.1
Predicted protein (228 aa)
     
 
  0.668
PP1S85_31V6.1
annotation not available (2489 aa)
     
 
  0.668
PP1S53_8V6.1
annotation not available (1983 aa)
     
 
  0.668
PP1S41_25V6.1
annotation not available (2520 aa)
     
 
  0.668
PP1S56_120V6.1
Predicted protein (604 aa)
     
   
  0.654
PP1S47_85V6.1
Predicted protein (595 aa)
     
   
  0.612
GTC1501
FACT complex subunit (1060 aa)
     
   
  0.610
PP1S199_36V6.1
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (674 aa)
     
   
  0.596
PP1S56_234V6.1
annotation not available (139 aa)
           
  0.595
PP1S31_349V6.1
annotation not available (301 aa)
           
  0.595
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (7%) [HD]