STRINGSTRING
PP1S68_122V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S68_122V6.2" - Annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S68_122V6.2Annotation not available (308 aa)    
Predicted Functional Partners:
PP1S362_27V6.1
Predicted protein (738 aa)
     
      0.882
HDA1509
Class II RPD3 type histone deacetylase protein (459 aa)
   
  0.874
HDA1511
Class II RPD3 type histone deacetylase protein (785 aa)
   
  0.874
PP1S312_11V6.1
Annotation not available (478 aa)
   
  0.874
PP1S14_283V6.1
Predicted protein (148 aa)
   
  0.874
PP1S145_70V6.1
Annotation not available (537 aa)
   
  0.874
HDA1508
Histone deacetylase complex, catalytic component HDA1 (374 aa)
   
  0.874
PP1S73_155V6.1
Annotation not available (317 aa)
       
  0.837
PP1S44_137V6.1
Annotation not available (311 aa)
       
  0.837
PP1S16_71V6.1
Annotation not available (322 aa)
       
  0.837
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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