• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S68_78V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S68_78V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S68_78V6.1Predicted protein (1033 aa)    
Predicted Functional Partners:
3989066
Predicted protein; Belongs to the universal ribosomal protein uL16 family (561 aa)
   
 
  0.991
PP1S267_85V6.1
Predicted protein (387 aa)
   
 
  0.980
PP1S83_182V6.1
Ribosomal protein ; Belongs to the bacterial ribosomal protein bL36 family (130 aa)
   
 
  0.938
PP1S1_793V6.3
annotation not available (291 aa)
   
 
  0.903
PP1S97_115V6.1
Uncharacterized protein (293 aa)
   
 
  0.887
PP1S38_329V6.2
Predicted protein (293 aa)
   
 
  0.887
PP1S371_31V6.2
Predicted protein (317 aa)
   
 
  0.887
PP1S364_3V6.1
Predicted protein (293 aa)
   
 
  0.887
PP1S93_182V6.1
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1046 aa)
     
        0.880
PP1S316_6V6.1
Predicted protein; Belongs to the universal ribosomal protein uS11 family (151 aa)
   
 
  0.878
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (11%) [HD]