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STRINGSTRING
PP1S6_446V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S6_446V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S6_446V6.1Predicted protein (170 aa)    
Predicted Functional Partners:
PP1S210_36V6.1
DNA helicase; Belongs to the MCM family (877 aa)
           
  0.702
PP1S352_43V6.2
Predicted protein (154 aa)
           
  0.597
PP1S300_12V6.1
Predicted protein (1783 aa)
           
  0.597
PP1S198_12V6.1
Predicted protein (142 aa)
           
  0.597
RDR1501
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1151 aa)
           
  0.579
RDR1502
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1152 aa)
           
  0.578
PP1S41_1V6.1
Predicted protein (396 aa)
           
  0.557
PP1S103_117V6.3
Predicted protein (397 aa)
           
  0.557
PP1S245_93V6.1
annotation not available (977 aa)
           
  0.552
PP1S225_109V6.1
annotation not available (859 aa)
           
  0.536
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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