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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S7030_1V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S7030_1V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S7030_1V6.1Predicted protein (206 aa)    
Predicted Functional Partners:
PP1S224_38V6.1
Predicted protein (991 aa)
     
 
  0.905
CHR1515
annotation not available (3163 aa)
     
 
  0.884
CHR1545
annotation not available (3255 aa)
     
 
  0.884
PP1S75_115V6.1
Predicted protein (839 aa)
     
        0.856
PP1S11_22V6.1
annotation not available (1526 aa)
     
        0.856
PP1S1_778V6.1
Uncharacterized protein (810 aa)
     
   
  0.806
PP1S173_137V6.1
Uncharacterized protein (1037 aa)
     
   
  0.771
PP1S144_14V6.1
Predicted protein (735 aa)
     
 
  0.732
PP1S127_123V6.2
Predicted protein; Belongs to the peptidase C19 family (583 aa)
     
 
  0.684
PP1S96_129V6.1
annotation not available (2208 aa)
     
 
  0.681
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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