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STRINGSTRING
PP1S70_58V6.2 protein (Physcomitrella patens) - STRING interaction network
"PP1S70_58V6.2" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S70_58V6.2Predicted protein (393 aa)    
Predicted Functional Partners:
PP1S14_256V6.1
Predicted protein (893 aa)
           
  0.587
PP1S44_270V6.1
annotation not available (863 aa)
           
  0.530
PP1S10_92V6.1
Predicted protein (661 aa)
           
  0.530
PP1S475_13V6.1
Predicted protein (1396 aa)
           
  0.528
PP1S170_42V6.1
Predicted protein (445 aa)
           
  0.515
PP1S12_364V6.1
Predicted protein (393 aa)
           
  0.515
PpCCA1b
Circadian clock-associated protein 1b (1000 aa)
           
  0.504
PpCCA1a
Cca1a circadian clock protein CCA1a (873 aa)
           
  0.504
PP1S86_52V6.1
Predicted protein (1094 aa)
           
  0.452
PP1S37_348V6.1
Predicted protein (1343 aa)
           
  0.452
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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