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STRINGSTRING
PP1S71_230V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S71_230V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S71_230V6.1Predicted protein (751 aa)    
Predicted Functional Partners:
PP1S32_278V6.1
Predicted protein (482 aa)
 
  0.999
PP1S210_40V6.1
Predicted protein (475 aa)
 
  0.999
PP1S312_21V6.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (251 aa)
 
 
  0.991
PP1S73_243V6.2
Predicted protein (485 aa)
 
   
  0.980
PP1S62_157V6.4
annotation not available (485 aa)
 
   
  0.980
PP1S149_51V6.2
Predicted protein (426 aa)
   
   
  0.871
PP1S90_44V6.2
Predicted protein (339 aa)
 
   
  0.825
PP1S211_107V6.1
Predicted protein (356 aa)
 
   
  0.824
HDS3
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (749 aa)
   
   
 
0.801
PP1S20_67V6.1
Predicted protein (751 aa)
   
   
 
0.801
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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