STRINGSTRING
PP1S725_2V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S725_2V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S725_2V6.1Predicted protein (633 aa)    
Predicted Functional Partners:
PP1S77_136V6.1
Annotation not available (1012 aa)
         
  0.817
PP1S129_147V6.1
Alpha-mannosidase (1047 aa)
         
0.806
PP1S2536_2V6.1
Predicted protein (461 aa)
 
     
  0.726
PP1S367_3V6.1
Predicted protein (246 aa)
       
      0.668
PP1S22_359V6.1
Predicted protein (863 aa)
       
      0.666
PP1S164_60V6.2
Annotation not available (622 aa)
       
      0.666
PP1S87_171V6.1
Predicted protein (448 aa)
       
      0.648
PP1S80_128V6.1
Predicted protein (470 aa)
       
      0.648
PP1S169_104V6.1
Predicted protein (360 aa)
       
      0.637
PP1S13_33V6.2
Predicted protein (790 aa)
         
  0.623
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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