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STRINGSTRING
PP1S72_181V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S72_181V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S72_181V6.1Predicted protein (1010 aa)    
Predicted Functional Partners:
PP1S145_26V6.3
Predicted protein (750 aa)
     
      0.948
PP1S357_38V6.1
Predicted protein (618 aa)
       
      0.947
PP1S1_770V6.1
RNA polymerase II transcription factor B subunit 2; Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA (462 aa)
       
      0.947
PP1S54_236V6.1
Predicted protein; Belongs to the cyclin family (296 aa)
     
      0.854
PP1S263_21V6.1
Predicted protein; Belongs to the cyclin family (356 aa)
     
      0.854
PP1S43_121V6.1
Predicted protein; Belongs to the protein kinase superfamily (408 aa)
       
      0.846
PP1S30_226V6.1
Uncharacterized protein; Belongs to the protein kinase superfamily (437 aa)
       
      0.846
PP1S150_11V6.1
Predicted protein; Belongs to the protein kinase superfamily (326 aa)
       
      0.846
PP1S286_16V6.1
Predicted protein (389 aa)
     
   
  0.785
MurE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (606 aa)
     
   
  0.671
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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