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STRINGSTRING
PP1S72_274V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S72_274V6.1" - Rhomboid-like protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S72_274V6.1Rhomboid-like protein (471 aa)    
Predicted Functional Partners:
PP1S34_360V6.1
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (632 aa)
   
   
  0.609
PP1S12_189V6.2
Predicted protein (333 aa)
     
   
  0.566
PP1S63_95V6.2
Predicted protein (362 aa)
     
 
  0.541
PP1S17_10V6.2
Predicted protein (272 aa)
           
  0.529
PP1S55_148V6.1
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors; Belongs to the peptidase A22A family (477 aa)
     
   
  0.528
PP1S124_132V6.1
Predicted protein (400 aa)
           
  0.527
PP1S62_89V6.3
annotation not available (422 aa)
           
  0.525
PP1S51_233V6.1
annotation not available (459 aa)
         
  0.508
PP1S396_8V6.1
annotation not available (1069 aa)
     
   
  0.505
PP1S276_67V6.1
Predicted protein (311 aa)
           
  0.482
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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