• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S74_175V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S74_175V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S74_175V6.1Predicted protein (544 aa)    
Predicted Functional Partners:
PP1S382_35V6.1
Predicted protein (436 aa)
     
 
  0.972
PP1S19_81V6.1
annotation not available (427 aa)
     
 
  0.972
PP1S8_311V6.1
annotation not available (1020 aa)
     
 
  0.963
PP1S12_286V6.1
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs (282 aa)
     
 
  0.961
PP1S19_315V6.1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
     
 
  0.954
PP1S132_139V6.1
Predicted protein (147 aa)
       
 
  0.952
GTF1502.1
TATA-box binding protein, component of TFIID and TFIIIB (211 aa)
     
 
  0.949
GTF1502.2
TATA-box binding protein, component of TFIID and TFIIIB (265 aa)
     
 
  0.949
PP1S74_182V6.1
Predicted protein (122 aa)
     
 
  0.935
PP1S30_300V6.1
Uncharacterized protein (371 aa)
     
 
  0.933
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (8%) [HD]