STRINGSTRING
PP1S74_242V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S74_242V6.1" - Annotation not available in Physcomitrella patens
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S74_242V6.1Annotation not available (398 aa)    
Predicted Functional Partners:
PP1S50_181V6.1
Annotation not available (1070 aa)
     
 
  0.946
GTA1501
RNA polymerase II transcription elongation factor SPT5 (1060 aa)
     
 
  0.946
PP1S97_14V6.1
Predicted protein (480 aa)
     
 
  0.937
GTG1501
Transcription elongation factor SPT4; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (120 aa)
       
 
  0.885
PP1S295_46V6.1
Predicted protein (1014 aa)
   
   
  0.882
PP1S541_4V6.1
Annotation not available (682 aa)
     
 
  0.699
PP1S29_171V6.1
Predicted protein (546 aa)
     
 
  0.699
PP1S15_366V6.1
DNA-directed RNA polymerase (771 aa)
     
 
  0.699
PP1S253_40V6.1
Predicted protein (360 aa)
     
      0.653
PP1S164_112V6.1
Annotation not available (414 aa)
     
      0.653
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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