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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S78_5V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S78_5V6.1" - annotation not available in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S78_5V6.1annotation not available (98 aa)    
Predicted Functional Partners:
PP1S9_361V6.1
annotation not available (128 aa)
     
        0.885
PP1S73_64V6.1
DNA-directed RNA polymerase subunit (162 aa)
     
        0.885
PP1S168_35V6.1
Predicted protein; Belongs to the small Tim family (89 aa)
     
        0.885
PP1S66_289V6.1
Predicted protein (157 aa)
     
        0.872
PP1S131_177V6.1
Predicted protein (157 aa)
     
        0.872
PP1S28_170V6.1
Uncharacterized protein (85 aa)
     
        0.865
PP1S207_37V6.1
Predicted protein (919 aa)
     
   
  0.793
PP1S141_10V6.1
annotation not available (548 aa)
           
  0.754
PP1S65_84V6.1
Predicted protein (793 aa)
           
  0.700
PP1S34_185V6.1
Predicted protein (794 aa)
           
  0.700
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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