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STRINGSTRING
HO2b protein (Physcomitrella patens) - STRING interaction network
"HO2b" - Uncharacterized protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HO2bUncharacterized protein (939 aa)    
Predicted Functional Partners:
ppabcb22
annotation not available (562 aa)
     
   
  0.941
PP1S68_167V6.1
Predicted protein (355 aa)
   
   
  0.906
PP1S88_186V6.1
Predicted protein (1189 aa)
   
   
  0.885
PP1S81_123V6.1
Predicted protein (1194 aa)
   
   
  0.885
PP1S23_11V6.2
Glutathione S-transferase kappa (240 aa)
     
        0.885
PP1S403_7V6.1
Predicted protein (1084 aa)
     
        0.878
PP1S212_40V6.1
Predicted protein (881 aa)
     
        0.878
PP1S160_96V6.1
Adenylyl cyclase-associated protein ; Belongs to the CAP family (512 aa)
     
        0.866
PP1S160_127V6.1
Predicted protein (421 aa)
       
 
  0.824
PP1S28_327V6.1
Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth (416 aa)
   
   
  0.736
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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