• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S7_209V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S7_209V6.1" - Protein MAK16 homolog in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S7_209V6.1Protein MAK16 homolog; Belongs to the MAK16 family (311 aa)    
Predicted Functional Partners:
PP1S37_345V6.1
Predicted protein (451 aa)
     
 
  0.992
PP1S139_5V6.1
Predicted protein (351 aa)
     
 
  0.991
PP1S53_169V6.1
Predicted protein (312 aa)
     
 
  0.991
PP1S349_11V6.1
annotation not available (700 aa)
     
 
  0.991
PP1S148_31V6.1
annotation not available (490 aa)
     
 
  0.991
PP1S104_30V6.1
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (186 aa)
     
 
  0.990
PP1S294_14V6.1
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (434 aa)
     
 
  0.990
PP1S106_134V6.1
Predicted protein (329 aa)
     
 
  0.990
PP1S431_4V6.1
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (232 aa)
     
 
  0.988
PP1S138_84V6.2
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (240 aa)
     
 
  0.988
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (9%) [HD]