STRINGSTRING
Pphb7 protein (Physcomitrella patens) - STRING interaction network
"Pphb7" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pphb7Predicted protein (386 aa)    
Predicted Functional Partners:
PP1S65_79V6.1
KINID1b (1197 aa)
           
  0.517
PP1S34_181V6.1
KINID1a (1236 aa)
           
  0.517
Pphb1
Predicted protein (267 aa)
           
  0.480
PprbcS1
Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions- the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (184 aa)
           
  0.480
POR1
Predicted proteinProtochlorophyllide reductase chloroplast (402 aa)
           
  0.480
PpTUA1
Predicted protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (449 aa)
           
  0.448
PP1S9_476V6.1
Annotation not available (307 aa)
           
  0.407
PP1S38_402V6.1
Annotation not available (379 aa)
           
  0.407
PP1S317_13V6.1
Annotation not available (680 aa)
           
  0.407
PP1S181_60V6.1
Predicted protein (320 aa)
           
  0.407
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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