• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
PP1S80_180V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S80_180V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S80_180V6.1Predicted protein (293 aa)    
Predicted Functional Partners:
PP1S93_123V6.1
Predicted protein (1839 aa)
           
  0.562
PP1S41_16V6.1
Predicted protein (332 aa)
           
  0.562
CHR1544
SNF2 family DNA-dependent ATPase (1855 aa)
           
  0.562
PP1S178_144V6.1
Predicted protein (354 aa)
           
  0.547
PP1S265_32V6.2
annotation not available (139 aa)
     
        0.541
PP1S62_89V6.3
annotation not available (422 aa)
     
   
  0.526
PP1S59_67V6.1
Uncharacterized protein (523 aa)
           
  0.517
PP1S30_293V6.1
Uncharacterized protein (594 aa)
           
  0.517
PP1S107_192V6.1
Predicted protein (351 aa)
           
  0.506
PP1S55_148V6.1
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors; Belongs to the peptidase A22A family (477 aa)
           
  0.502
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (13%) [HD]