STRINGSTRING
PP1S8153_2V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S8153_2V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S8153_2V6.1Predicted protein (147 aa)    
Predicted Functional Partners:
PP1S149_275V6.1
Predicted protein (963 aa)
         
  0.616
PP1S1_183V6.1
Predicted protein (556 aa)
   
   
  0.555
PP1S5942_1V6.1
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (108 aa)
              0.501
PP1S52_162V6.1
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (307 aa)
              0.501
PP1S336_13V6.1
Annotation not available (338 aa)
              0.501
PP1S62_191V6.1
Annotation not available (411 aa)
       
  0.437
PP1S43_51V6.1
Predicted protein (420 aa)
       
  0.437
PP1S23_318V6.1
Predicted protein (419 aa)
       
  0.437
PP1S210_72V6.1
Predicted protein (406 aa)
       
  0.437
PP1S192_4V6.1
Predicted protein (399 aa)
       
  0.437
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: Bryophyta, Bryophytina, Bryopsida, Funariaceae, Funariales, Funariidae, Moss Superclass V, Musci, P. patens, Physcomitrella, Physcomitrella Bruch & Schimp, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt., bryophytes, mosses
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