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STRINGSTRING
PP1S87_46V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S87_46V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S87_46V6.1Predicted protein (223 aa)    
Predicted Functional Partners:
PP1S270_56V6.1
Predicted protein (177 aa)
     
        0.885
PP1S20_386V6.2
Predicted protein (190 aa)
     
        0.885
PP1S167_153V6.1
annotation not available (221 aa)
     
        0.885
PP1S307_70V6.1
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription (149 aa)
     
        0.882
PP1S158_121V6.1
Predicted protein (292 aa)
     
        0.874
PP1S28_170V6.1
Uncharacterized protein (85 aa)
     
        0.861
PP1S291_59V6.1
annotation not available (263 aa)
     
      0.808
PP1S220_85V6.1
Predicted protein (263 aa)
     
      0.808
PP1S7_57V6.1
annotation not available (551 aa)
     
 
  0.796
PP1S309_60V6.1
annotation not available (1074 aa)
           
  0.784
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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