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STRINGSTRING
PP1S87_50V6.1 protein (Physcomitrella patens) - STRING interaction network
"PP1S87_50V6.1" - Predicted protein in Physcomitrella patens
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP1S87_50V6.1Predicted protein (907 aa)    
Predicted Functional Partners:
PP1S31_336V6.1
Predicted protein; Belongs to the cullin family (734 aa)
       
 
  0.789
PP1S311_38V6.1
Predicted protein; Belongs to the cullin family (746 aa)
       
 
  0.789
PP1S83_93V6.1
annotation not available (950 aa)
           
  0.696
PP1S462_10V6.1
annotation not available (1191 aa)
           
  0.693
ACL2
ACL2 AtACS-like ACC synthase (514 aa)
       
 
  0.683
PP1S54_141V6.1
Predicted protein (1575 aa)
     
   
  0.630
PP1S197_39V6.1
Predicted protein (1545 aa)
     
   
  0.630
CPC1502
annotation not available (1209 aa)
           
  0.613
PP1S13_142V6.1
Predicted protein; Belongs to the TrpA family (347 aa)
           
  0.613
PP1S46_238V6.1
annotation not available (353 aa)
       
 
  0.612
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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